STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl5bADP-ribosylation factor-like 8; Belongs to the small GTPase superfamily. Arf family. (179 aa)    
Predicted Functional Partners:
LOC107104443
Intersectin 2b.
    
 0.829
ENSCVAP00000031587
Uncharacterized protein.
    
 0.829
ENSCVAP00000031602
Uncharacterized protein.
    
 0.829
snapin
SNAP associated protein.
     
 0.774
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.713
gak
Cyclin G associated kinase.
    
 0.689
nsun6
NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.685
ENSCVAP00000014456
Uncharacterized protein.
    
 0.682
ENSCVAP00000005490
ADP-ribosylation factor GTPase activating protein 1.
   
 0.678
ENSCVAP00000027322
Calcium channel, voltage-dependent, beta 2b.
 
 
 
 0.677
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.