STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107090027RRM domain-containing protein. (450 aa)    
Predicted Functional Partners:
srsf2
Serine and arginine rich splicing factor 2a.
   
 0.774
Srrm1
PWI domain-containing protein.
   
 0.715
pnisr
PNN-interacting serine/arginine-rich protein.
   
 
 0.703
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.669
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.662
LOC107101924
RRM domain-containing protein.
   
 0.662
srsf10
Serine and arginine rich splicing factor 10.
   
 0.662
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
     
 0.653
LOC107091295
Serine and arginine rich splicing factor 9.
   
 0.653
slu7
SLU7 homolog, splicing factor.
     
 0.648
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.