STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim5PDZ and LIM domain 5a. (571 aa)    
Predicted Functional Partners:
parvg
Parvin, gamma.
   
 0.551
LOC107101152
Parvin, alpha a.
   
 0.551
parvb
Parvin, beta.
   
 0.551
ret
Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.
   
 0.548
LOC107084591
Vinculin a.
   
 0.527
ENSCVAP00000021860
Uncharacterized protein.
   
 0.527
vcl
Vinculin b.
   
 0.527
actn3
Actinin alpha 3b.
   
 
 0.521
LOC107084685
Actinin, alpha 2b.
   
 
 0.521
ACTN4
Actinin alpha 4.
   
 
 0.521
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.