STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107083298Sestrin 2. (553 aa)    
Predicted Functional Partners:
wdr24
WD repeat domain 24.
    
 0.978
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.973
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.960
Seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
     
 0.959
LOC107092565
Si:zfos-80g12.1.
  
  
 
0.904
sesn1
Sestrin 1.
  
  
 
0.903
ENSCVAP00000015681
Uncharacterized protein.
    
 0.767
Depdc5
Uncharacterized protein.
    
 0.767
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.757
nprl3
NPR3-like, GATOR1 complex subunit.
    
 0.747
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.