STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC3Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (428 aa)    
Predicted Functional Partners:
LOC107085337
Pleiotrophin.
    
 
 0.687
LOC107098638
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
      
 0.664
LOC107105123
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
0.661
LOC107087951
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
0.658
vcan
Versican a.
     
 0.628
ext2
Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.
     
 0.605
LOC107103085
Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.
      
 0.589
dcn
Decorin; May affect the rate of fibrils formation.
     
 0.589
ENSCVAP00000029384
Decorin; May affect the rate of fibrils formation.
     
 0.589
sdc2
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
0.581
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.