STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107085465RAS protein activator like 3. (1165 aa)    
Predicted Functional Partners:
rrad
Ras-related associated with diabetes.
    
 0.748
LOC107087040
Rho guanine nucleotide exchange factor (GEF) 3, like.
   
  
 0.696
akap12
A kinase (PRKA) anchor protein 12b.
      
 0.663
ENSCVAP00000018108
Homeobox domain-containing protein.
   
  
 0.640
fbxw2
F-box and WD repeat domain containing 2.
    
 
 0.628
ENSCVAP00000029489
Uncharacterized protein.
    
 0.573
foxf1
Forkhead box F1.
      
 0.549
ttll11
Tubulin tyrosine ligase-like family, member 11.
      
 0.545
arhgap5
Rho GTPase activating protein 5.
    
 0.542
LOC107101005
Rho GTPase activating protein 35b.
    
 0.542
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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