STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sde2SDE2 telomere maintenance homolog (S. pombe). (406 aa)    
Predicted Functional Partners:
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.962
slu7
SLU7 homolog, splicing factor.
    
 0.950
fam32a
Family with sequence similarity 32 member A.
    
 0.943
prkrip1
PRKR interacting protein 1.
    
 0.939
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.922
prpf19
Pre-mRNA processing factor 19.
    
 
 0.913
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.908
nkap
NFKB activating protein.
    
 0.900
WDR25
WD repeat domain 25.
    
 0.889
cwc15
CWC15 spliceosome associated protein homolog.
    
 
 0.888
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.