STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nptx1Uncharacterized protein. (423 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.701
rnf2
Ring finger protein 2.
    
 0.701
ppp1r14c
Protein phosphatase 1, regulatory (inhibitor) subunit 14C.
   
    0.601
nsmaf
Neutral sphingomyelinase (N-SMase) activation associated factor.
      
 0.547
LOC107084567
Glutathione S-transferase.
      
 0.542
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
      
 0.536
eed
Embryonic ectoderm development.
    
 0.532
tmem130
Transmembrane protein 130.
      
 0.495
LOC107088198
Bicaudal C homolog 2.
      
 0.495
psma1
Proteasome endopeptidase complex.
      
 0.493
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.