STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd6ipProgrammed cell death 6 interacting protein. (875 aa)    
Predicted Functional Partners:
LOC107086476
Charged multivesicular body protein 4C.
   
 0.987
LOC107093444
Uncharacterized protein.
   
 0.987
LOC107086700
Charged multivesicular body protein 4Bb.
   
 0.987
mvb12a
Uncharacterized protein.
     
 0.932
mvb12b
Multivesicular body subunit 12Ba.
     
 0.931
LOC107095935
Uncharacterized protein.
     
 0.931
cep55
Centrosomal protein 55 like.
    
 
 0.865
tsg101
Tumor susceptibility 101a.
   
 0.862
ENSCVAP00000024543
Zgc:123278.
   
 0.862
LOC107099944
Syndecan binding protein (syntenin) 2.
    
 0.856
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.