STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl52Mitochondrial ribosomal protein L52. (135 aa)    
Predicted Functional Partners:
mrps30
Mitochondrial ribosomal protein S30.
    
 
 0.946
mrps16
Mitochondrial ribosomal protein S16.
   
   0.945
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.942
mrpl24
Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.
   
 
 0.936
mrpl30
Mitochondrial ribosomal protein L30.
   
 
 0.928
ENSCVAP00000001278
Uncharacterized protein.
   
 
 0.925
mrpl42
Mitochondrial ribosomal protein L42.
   
 
 0.925
ENSCVAP00000010673
Uncharacterized protein.
   
 
 0.925
mrpl51
Mitochondrial ribosomal protein L51.
   
 
 0.922
mrpl13
Mitochondrial ribosomal protein L13.
   
 
 0.920
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.