STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107092708Scavenger receptor class B, member 2c; Belongs to the CD36 family. (481 aa)    
Predicted Functional Partners:
cd63
Tetraspanin.
     
 0.919
LOC107089373
Tetraspanin.
     
 0.909
scarb2
Uncharacterized protein; Belongs to the CD36 family.
  
  
 
0.908
LOC107085193
Scavenger receptor class B, member 2a; Belongs to the CD36 family.
  
  
 
0.902
dab2
DAB adaptor protein 2.
   
 
 0.603
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
     
 0.600
LOC107084970
TIR domain-containing protein; Belongs to the Toll-like receptor family.
   
 0.585
LOC107084938
TIR domain-containing protein.
   
 0.585
LOC107081658
Apolipoprotein Bb, tandem duplicate 2.
    
 0.552
ENSCVAP00000001456
Vitellogenin domain-containing protein.
    
 0.552
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.