STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd10Programmed cell death 10b. (210 aa)    
Predicted Functional Partners:
slmap
Sarcolemma associated protein a.
   
 
 0.968
LOC107095707
MOB family member 4, phocein.
   
 
 0.958
ccm2
CCM2 scaffold protein.
    
 
 0.957
traf3ip3
Uncharacterized protein.
    
 
 0.956
fgfr1op2
FGFR1 oncogene partner 2.
    
 
 0.927
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.915
LOC107094837
CTTNBP2 N-terminal like b.
    
 
 0.903
LOC107103357
CTTNBP2 N-terminal like a.
    
 
 0.903
LOC107097550
Sarcolemma associated protein b.
   
 
 0.897
Ccm2l
CCM2 like scaffold protein.
    
 
 0.835
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.