LOC107089311 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107089311

Uncharacterized protein. (265 aa)

Predicted Functional Partners:

COX2

0.676

LOC107084541

0.617

LOC107097411

0.611

COX5A

0.611

LOC107097799

0.567

ENSCVAP00000026389

0.567

LOC107102475

0.550

LOC107084515

0.550

LOC107088355

0.546

COX5B

0.546

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COX2	COX5A	ENSCVAP00000000005	ENSCVAP00000006513	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 5A.	0.991
COX2	COX5B	ENSCVAP00000000005	ENSCVAP00000007468	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 5B.	0.962
COX2	ENSCVAP00000026389	ENSCVAP00000000005	ENSCVAP00000026389	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.972
COX2	LOC107084515	ENSCVAP00000000005	ENSCVAP00000031176	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 4I1.	0.975
COX2	LOC107084541	ENSCVAP00000000005	ENSCVAP00000032027	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 7C.	0.999
COX2	LOC107088355	ENSCVAP00000000005	ENSCVAP00000003438	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 5B2.	0.962
COX2	LOC107089311	ENSCVAP00000000005	ENSCVAP00000005935	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Uncharacterized protein.	0.676
COX2	LOC107097411	ENSCVAP00000000005	ENSCVAP00000000401	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 5Ab.	0.991
COX2	LOC107097799	ENSCVAP00000000005	ENSCVAP00000007284	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.972
COX2	LOC107102475	ENSCVAP00000000005	ENSCVAP00000025455	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 4I2.	0.975
COX5A	COX2	ENSCVAP00000006513	ENSCVAP00000000005	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.991
COX5A	COX5B	ENSCVAP00000006513	ENSCVAP00000007468	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 5B.	0.973
COX5A	ENSCVAP00000026389	ENSCVAP00000006513	ENSCVAP00000026389	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.984
COX5A	LOC107084515	ENSCVAP00000006513	ENSCVAP00000031176	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 4I1.	0.986
COX5A	LOC107084541	ENSCVAP00000006513	ENSCVAP00000032027	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 7C.	0.999
COX5A	LOC107088355	ENSCVAP00000006513	ENSCVAP00000003438	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 5B2.	0.973
COX5A	LOC107089311	ENSCVAP00000006513	ENSCVAP00000005935	Cytochrome c oxidase subunit 5A.	Uncharacterized protein.	0.611
COX5A	LOC107097411	ENSCVAP00000006513	ENSCVAP00000000401	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 5Ab.	0.901
COX5A	LOC107097799	ENSCVAP00000006513	ENSCVAP00000007284	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.984
COX5A	LOC107102475	ENSCVAP00000006513	ENSCVAP00000025455	Cytochrome c oxidase subunit 5A.	Cytochrome c oxidase subunit 4I2.	0.986