STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ncapg2Non-SMC condensin II complex, subunit G2. (1164 aa)    
Predicted Functional Partners:
ENSCVAP00000022554
Non-SMC condensin II complex, subunit D3.
   
 0.998
smc2
Structural maintenance of chromosomes protein.
   
 0.994
ENSCVAP00000016621
CNDH2_N domain-containing protein.
   
 0.971
ncaph2
Non-SMC condensin II complex, subunit H2.
   
 0.971
smc4
Structural maintenance of chromosomes protein.
   
 0.951
smc3
Structural maintenance of chromosomes protein.
   
 0.867
shcbp1
SHC SH2-domain binding protein 1.
   
  
 0.850
smc5
Structural maintenance of chromosomes 5.
   
 0.846
ncaph
Non-SMC condensin I complex, subunit H.
   
 
 0.828
ncapd2
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
   
 
 0.823
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.