STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107091029Uncharacterized protein. (568 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 0.852
grpel1
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.
  
 0.763
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 
 0.757
LOC107105079
Uncharacterized protein.
  
 0.756
ENSCVAP00000016759
Uncharacterized protein.
  
 0.756
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 0.703
ENSCVAP00000004363
WW domain-containing protein.
   
 0.664
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 0.644
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.610
LOC107095707-2
Heat shock 10 protein 1; Belongs to the GroES chaperonin family.
  
 
 0.609
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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