dpy19l3 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dpy19l3

Dpy-19 like C-mannosyltransferase 3. (707 aa)

Predicted Functional Partners:

tsr3

0.748

ccdc126

0.699

tsr2

0.582

pofut2

0.553

adamts13

0.533

unc5a

0.519

LOC107084418

0.503

LOC107083001

0.501

LOC107098636

0.490

RAP1GDS1

0.490

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107083001	LOC107098636	ENSCVAP00000014138	ENSCVAP00000008015	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	Si:dkey-191g9.5.	0.400
LOC107083001	RAP1GDS1	ENSCVAP00000014138	ENSCVAP00000017518	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	Rap1 GTPase-GDP dissociation stimulator 1.	0.400
LOC107083001	ccdc126	ENSCVAP00000014138	ENSCVAP00000024645	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	Coiled-coil domain containing 126.	0.535
LOC107083001	dpy19l3	ENSCVAP00000014138	ENSCVAP00000006000	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	Dpy-19 like C-mannosyltransferase 3.	0.501
LOC107084418	adamts13	ENSCVAP00000006916	ENSCVAP00000009119	ADAM metallopeptidase with thrombospondin type 1 motif, 16.	ADAM metallopeptidase with thrombospondin type 1 motif, 13.	0.532
LOC107084418	dpy19l3	ENSCVAP00000006916	ENSCVAP00000006000	ADAM metallopeptidase with thrombospondin type 1 motif, 16.	Dpy-19 like C-mannosyltransferase 3.	0.503
LOC107084418	pofut2	ENSCVAP00000006916	ENSCVAP00000013435	ADAM metallopeptidase with thrombospondin type 1 motif, 16.	Protein O-fucosyltransferase 2.	0.548
LOC107098636	LOC107083001	ENSCVAP00000008015	ENSCVAP00000014138	Si:dkey-191g9.5.	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	0.400
LOC107098636	ccdc126	ENSCVAP00000008015	ENSCVAP00000024645	Si:dkey-191g9.5.	Coiled-coil domain containing 126.	0.540
LOC107098636	dpy19l3	ENSCVAP00000008015	ENSCVAP00000006000	Si:dkey-191g9.5.	Dpy-19 like C-mannosyltransferase 3.	0.490
RAP1GDS1	LOC107083001	ENSCVAP00000017518	ENSCVAP00000014138	Rap1 GTPase-GDP dissociation stimulator 1.	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	0.400
RAP1GDS1	ccdc126	ENSCVAP00000017518	ENSCVAP00000024645	Rap1 GTPase-GDP dissociation stimulator 1.	Coiled-coil domain containing 126.	0.540
RAP1GDS1	dpy19l3	ENSCVAP00000017518	ENSCVAP00000006000	Rap1 GTPase-GDP dissociation stimulator 1.	Dpy-19 like C-mannosyltransferase 3.	0.490
adamts13	LOC107084418	ENSCVAP00000009119	ENSCVAP00000006916	ADAM metallopeptidase with thrombospondin type 1 motif, 13.	ADAM metallopeptidase with thrombospondin type 1 motif, 16.	0.532
adamts13	dpy19l3	ENSCVAP00000009119	ENSCVAP00000006000	ADAM metallopeptidase with thrombospondin type 1 motif, 13.	Dpy-19 like C-mannosyltransferase 3.	0.533
adamts13	pofut2	ENSCVAP00000009119	ENSCVAP00000013435	ADAM metallopeptidase with thrombospondin type 1 motif, 13.	Protein O-fucosyltransferase 2.	0.731
ccdc126	LOC107083001	ENSCVAP00000024645	ENSCVAP00000014138	Coiled-coil domain containing 126.	Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.	0.535
ccdc126	LOC107098636	ENSCVAP00000024645	ENSCVAP00000008015	Coiled-coil domain containing 126.	Si:dkey-191g9.5.	0.540
ccdc126	RAP1GDS1	ENSCVAP00000024645	ENSCVAP00000017518	Coiled-coil domain containing 126.	Rap1 GTPase-GDP dissociation stimulator 1.	0.540
ccdc126	dpy19l3	ENSCVAP00000024645	ENSCVAP00000006000	Coiled-coil domain containing 126.	Dpy-19 like C-mannosyltransferase 3.	0.699