STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxa1lOXA1L mitochondrial inner membrane protein. (484 aa)    
Predicted Functional Partners:
COX2
Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.
   
 
 0.897
LOC107100419
Plug_translocon domain-containing protein.
   
 0.896
sec61a1
Plug_translocon domain-containing protein.
   
 0.896
ENSCVAP00000029115
RF_PROK_I domain-containing protein.
  
 
 0.864
mrpl45
Mitochondrial ribosomal protein L45.
   
 
 0.852
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.840
chchd1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
    
 
 0.838
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.835
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.835
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.820
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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