STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnx1Motor neuron and pancreas homeobox 1. (317 aa)    
Predicted Functional Partners:
rfx6
Regulatory factor X, 6.
      
 0.602
LOC107087514
T-box transcription factor 20.
    
 
 0.564
rfx4
Regulatory factor X, 4.
      
 0.473
ptf1a
Pancreas associated transcription factor 1a.
   
 
 0.467
olig2
Oligodendrocyte lineage transcription factor 2.
   
  
 0.400
ENSCVAP00000022525
Neurogenin 3.
   
  
 0.400
neurod1
Neurogenic differentiation factor.
   
  
 0.400
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.