STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm33RNA binding motif protein 33a. (1216 aa)    
Predicted Functional Partners:
samd11
Sterile alpha motif domain containing 11.
      
 0.615
pgbd5
PiggyBac transposable element derived 5.
   
 
 0.615
fggy
FGGY carbohydrate kinase domain containing.
   
 0.597
ENSCVAP00000021704
Uncharacterized protein.
   
 
 0.573
nom1
Nucleolar protein with MIF4G domain 1.
      
 0.541
aig1
Androgen-induced 1 (H. sapiens).
      
 0.482
ENSCVAP00000025230
KRAP_IP3R_bind domain-containing protein.
      
 0.482
dnajc21
DnaJ heat shock protein family (Hsp40) member C21.
      
 0.479
bcl7b
BAF chromatin remodeling complex subunit BCL7B b.
      
 0.418
zc3h14
Zinc finger CCCH-type containing 14.
    
 
 0.412
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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