STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107093919Matrix metallopeptidase 11. (484 aa)    
Predicted Functional Partners:
furin
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
    
 0.789
LOC107095805
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
    
 0.787
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.590
LOC107083192
TIMP metallopeptidase inhibitor 2b.
   
 0.541
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.541
LOC107083472
Matrix metallopeptidase 13b.
  
0.489
LOC107083474
Matrix metallopeptidase 20b (enamelysin).
  
0.483
LOC107083460
Matrix metallopeptidase 20a (enamelysin).
  
0.482
mmp2
Matrix metallopeptidase 2.
   
0.453
timp4
TIMP metallopeptidase inhibitor 4.
    
 0.433
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.