STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098325Si:dkey-69o16.5. (240 aa)    
Predicted Functional Partners:
rpia
Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase).
     
 0.666
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.641
LOC107091515
IKAROS family zinc finger 4.
      
 0.635
LOC107100356
C1q domain-containing protein.
      
 0.631
WDR33
WD repeat domain 33.
      
 0.631
dusp28
Dual specificity phosphatase 28.
      
 0.574
IKZF4
IKAROS family zinc finger 4.
      
 0.549
proc
Uncharacterized protein.
      
 0.543
lmbr1l
Limb development membrane protein 1-like; Belongs to the LIMR family.
      
 0.540
slc9a8
Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
      
 0.506
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.