STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccniCyclin I; Belongs to the cyclin family. (387 aa)    
Predicted Functional Partners:
cdc27
Cell division cycle 27.
   
 0.725
cdc20
Cell division cycle 20 homolog.
   
 0.713
intu
Inturned planar cell polarity protein.
   
 0.713
LOC107082631
Fizzy/cell division cycle 20 related 1b.
   
 0.713
FZR1
Fizzy/cell division cycle 20 related 1a.
   
 0.713
LOC107087278
Ankyrin 1, erythrocytic a.
    
 0.703
rabepk
Rab9 effector protein with kelch motifs.
    
 
 0.691
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
   
  
 0.665
LOC107082853
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.664
ENSCVAP00000024539
Connexin 35.4.
      
 0.664
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.