STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTERF1Mitochondrial transcription termination factor 1. (382 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 
 0.815
cd63
Tetraspanin.
      
 0.619
Mrpl36
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.602
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
    
 
 0.561
mrrf
Mitochondrial ribosome recycling factor.
    
 
 0.546
lamp2
Lysosomal-associated membrane protein 2.
      
 0.544
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
    
   0.543
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.533
nfyb
Nuclear transcription factor Y, beta a.
   
    0.515
pink1
PTEN induced kinase 1.
     
 0.504
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.