flcn protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

flcn

Folliculin. (556 aa)

Predicted Functional Partners:

LOC107087875

0.997

fnip1

0.993

LOC107094261

0.992

rragc

0.992

lamtor2

0.900

lamtor3

0.882

lamtor1

0.880

lamtor5

0.868

lamtor4

0.849

slc38a9

0.811

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107087875	LOC107094261	ENSCVAP00000032017	ENSCVAP00000014886	Ras-related GTP binding A.	Uncharacterized protein.	0.997
LOC107087875	flcn	ENSCVAP00000032017	ENSCVAP00000006325	Ras-related GTP binding A.	Folliculin.	0.997
LOC107087875	fnip1	ENSCVAP00000032017	ENSCVAP00000021691	Ras-related GTP binding A.	Folliculin interacting protein 1.	0.960
LOC107087875	lamtor1	ENSCVAP00000032017	ENSCVAP00000014978	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.996
LOC107087875	lamtor2	ENSCVAP00000032017	ENSCVAP00000016936	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.997
LOC107087875	lamtor3	ENSCVAP00000032017	ENSCVAP00000027146	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.996
LOC107087875	lamtor4	ENSCVAP00000032017	ENSCVAP00000005845	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.994
LOC107087875	lamtor5	ENSCVAP00000032017	ENSCVAP00000010962	Ras-related GTP binding A.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.997
LOC107087875	rragc	ENSCVAP00000032017	ENSCVAP00000015207	Ras-related GTP binding A.	Ras-related GTP binding Ca.	0.997
LOC107087875	slc38a9	ENSCVAP00000032017	ENSCVAP00000008217	Ras-related GTP binding A.	Solute carrier family 38 member 9.	0.967
LOC107094261	LOC107087875	ENSCVAP00000014886	ENSCVAP00000032017	Uncharacterized protein.	Ras-related GTP binding A.	0.997
LOC107094261	flcn	ENSCVAP00000014886	ENSCVAP00000006325	Uncharacterized protein.	Folliculin.	0.992
LOC107094261	fnip1	ENSCVAP00000014886	ENSCVAP00000021691	Uncharacterized protein.	Folliculin interacting protein 1.	0.949
LOC107094261	lamtor1	ENSCVAP00000014886	ENSCVAP00000014978	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.	0.992
LOC107094261	lamtor2	ENSCVAP00000014886	ENSCVAP00000016936	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.	0.993
LOC107094261	lamtor3	ENSCVAP00000014886	ENSCVAP00000027146	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.	0.991
LOC107094261	lamtor4	ENSCVAP00000014886	ENSCVAP00000005845	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4.	0.990
LOC107094261	lamtor5	ENSCVAP00000014886	ENSCVAP00000010962	Uncharacterized protein.	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5.	0.993
LOC107094261	rragc	ENSCVAP00000014886	ENSCVAP00000015207	Uncharacterized protein.	Ras-related GTP binding Ca.	0.901
LOC107094261	slc38a9	ENSCVAP00000014886	ENSCVAP00000008217	Uncharacterized protein.	Solute carrier family 38 member 9.	0.912