STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdx1Pancreatic and duodenal homeobox 1. (259 aa)    
Predicted Functional Partners:
SPOP
Speckle type BTB/POZ protein.
    
   0.685
LOC107099308
Speckle type BTB/POZ protein like b.
    
   0.685
hnf1a
HNF1 homeobox a.
   
  
 0.664
ins
Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.
   
 
 0.620
ENSCVAP00000030679
IlGF domain-containing protein; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.
   
 
 0.620
ptf1a
Pancreas associated transcription factor 1a.
   
 
 0.577
LOC107089253
Uncharacterized protein.
      
 0.558
mafa
V-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Aa.
   
 0.524
ENSCVAP00000008463
Fork-head domain-containing protein.
    
 0.514
foxa2
Forkhead box A2.
    
 0.514
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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