STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107088811Uncharacterized protein. (226 aa)    
Predicted Functional Partners:
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.918
wdr36
WD repeat domain 36.
   
 
 0.906
pwp1
PWP1 homolog, endonuclein.
   
  
 0.904
LOC107086440
PWP2 small subunit processome component.
   
  
 0.901
rpf2
Ribosome production factor 2 homolog.
   
  
 0.880
bysl
Bystin-like.
   
  
 0.880
ddx56
DEAD (Asp-Glu-Ala-Asp) box helicase 56.
   
 
 0.875
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
  
 0.870
tbl3
Transducin (beta)-like 3.
   
  
 0.868
mrto4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
  
 0.864
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.