STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107103164Carnosine dipeptidase 2. (474 aa)    
Predicted Functional Partners:
upb1
Ureidopropionase, beta.
    
 0.942
abat
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.941
hdc
Histidine decarboxylase.
   
 
 0.928
hal
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
    
 0.927
gad2
Glutamate decarboxylase 2.
   
 
 0.923
GADL1
Glutamate decarboxylase like 1.
   
 
 0.923
LOC107086843
Glutamate decarboxylase 1b.
   
 
 0.923
gad1
Glutamate decarboxylase 1a.
   
 
 0.923
carnmt1
Carnosine N-methyltransferase 1.
     
 0.915
aldh9a1
Aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1; Belongs to the aldehyde dehydrogenase family.
    
 0.913
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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