STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mau2Uncharacterized protein. (91 aa)    
Predicted Functional Partners:
nipbl
Nipped-B protein.
    
 0.919
ENSCVAP00000032151
Uncharacterized protein.
    
 0.919
smc3
Structural maintenance of chromosomes protein.
   
 0.879
LOC107091708
WAPL cohesin release factor a.
     
 0.816
LOC107094973
WAPL cohesin release factor b.
     
 0.816
smc5
Structural maintenance of chromosomes 5.
   
 0.798
pds5a
PDS5 cohesin associated factor A.
   
 
 0.796
pds5b
PDS5 cohesin associated factor B.
   
 
 0.796
smc4
Structural maintenance of chromosomes protein.
   
 0.788
smc1a
Structural maintenance of chromosomes protein.
   
 0.773
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.