STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatad2aGATA zinc finger domain containing 2Ab. (638 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
   
 0.873
chd3
Chromodomain helicase DNA binding protein 3.
   
 0.758
chd4
Uncharacterized protein.
   
 0.758
LOC107086130
Chromodomain helicase DNA binding protein 4a.
   
 0.758
chd5
Uncharacterized protein.
   
 0.758
LOC107098384
Methyl-CpG binding domain protein 3a.
   
 0.740
LOC107103630
Methyl-CpG binding domain protein 2.
   
 0.740
wdr73
WD repeat domain 73.
   
 0.729
mta3
Metastasis associated 1 family, member 3.
   
 0.705
mta1
Metastasis associated 1.
   
 0.705
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.