STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB17RAB17, member RAS oncogene family. (236 aa)    
Predicted Functional Partners:
LOC107081922
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.925
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 0.925
psmd9
Uncharacterized protein.
   
 0.925
rbsn
Rabenosyn, RAB effector.
   
 0.833
appl2
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
 
 0.822
APPL1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.822
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.784
gak
Cyclin G associated kinase.
   
 0.743
ENSCVAP00000001993
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.727
gapvd1
GTPase activating protein and VPS9 domains 1.
    
 0.727
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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