STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRT222Keratin 222; Belongs to the intermediate filament family. (533 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.795
mmp28
Matrix metallopeptidase 28.
      
 0.644
ENSCVAP00000024289
Endothelin receptor type Ab.
     
 0.641
ranbp2
RAN binding protein 2.
   
 0.536
LOC107092166
Erb-b2 receptor tyrosine kinase 3b.
    
 
 0.508
tcf20
Transcription factor 20.
  
  0.455
LOC107098272
Human immunodeficiency virus type I enhancer binding protein 3a.
  
 
  0.435
rbbp5
Retinoblastoma binding protein 5.
    
 0.431
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.429
map1a
Microtubule-associated protein 1Aa.
  
    0.428
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.