ENSCVAP00000006523 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCVAP00000006523

Excision repair cross-complementation group 6-like. (678 aa)

Predicted Functional Partners:

ENSCVAP00000005887

0.911

cenpi

0.848

plk3

0.845

plk2

0.845

PLK1

0.845

pcna

0.844

mad2l1

0.842

fancm

0.832

rad18

0.818

ruvbl1

0.815

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000005887	ENSCVAP00000006523	ENSCVAP00000005887	ENSCVAP00000006523	XPGI domain-containing protein.	Excision repair cross-complementation group 6-like.	0.911
ENSCVAP00000005887	PLK1	ENSCVAP00000005887	ENSCVAP00000030252	XPGI domain-containing protein.	Serine/threonine-protein kinase PLK.	0.521
ENSCVAP00000005887	cenpi	ENSCVAP00000005887	ENSCVAP00000022880	XPGI domain-containing protein.	Centromere protein I.	0.499
ENSCVAP00000005887	fancm	ENSCVAP00000005887	ENSCVAP00000013080	XPGI domain-containing protein.	Uncharacterized protein.	0.885
ENSCVAP00000005887	mad2l1	ENSCVAP00000005887	ENSCVAP00000002759	XPGI domain-containing protein.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.669
ENSCVAP00000005887	pcna	ENSCVAP00000005887	ENSCVAP00000002844	XPGI domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.971
ENSCVAP00000005887	plk2	ENSCVAP00000005887	ENSCVAP00000025968	XPGI domain-containing protein.	Serine/threonine-protein kinase PLK.	0.521
ENSCVAP00000005887	plk3	ENSCVAP00000005887	ENSCVAP00000007698	XPGI domain-containing protein.	Serine/threonine-protein kinase PLK.	0.521
ENSCVAP00000005887	rad18	ENSCVAP00000005887	ENSCVAP00000000155	XPGI domain-containing protein.	RAD18 E3 ubiquitin protein ligase.	0.629
ENSCVAP00000006523	ENSCVAP00000005887	ENSCVAP00000006523	ENSCVAP00000005887	Excision repair cross-complementation group 6-like.	XPGI domain-containing protein.	0.911
ENSCVAP00000006523	PLK1	ENSCVAP00000006523	ENSCVAP00000030252	Excision repair cross-complementation group 6-like.	Serine/threonine-protein kinase PLK.	0.845
ENSCVAP00000006523	cenpi	ENSCVAP00000006523	ENSCVAP00000022880	Excision repair cross-complementation group 6-like.	Centromere protein I.	0.848
ENSCVAP00000006523	fancm	ENSCVAP00000006523	ENSCVAP00000013080	Excision repair cross-complementation group 6-like.	Uncharacterized protein.	0.832
ENSCVAP00000006523	mad2l1	ENSCVAP00000006523	ENSCVAP00000002759	Excision repair cross-complementation group 6-like.	MAD2 mitotic arrest deficient-like 1 (yeast).	0.842
ENSCVAP00000006523	pcna	ENSCVAP00000006523	ENSCVAP00000002844	Excision repair cross-complementation group 6-like.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.844
ENSCVAP00000006523	plk2	ENSCVAP00000006523	ENSCVAP00000025968	Excision repair cross-complementation group 6-like.	Serine/threonine-protein kinase PLK.	0.845
ENSCVAP00000006523	plk3	ENSCVAP00000006523	ENSCVAP00000007698	Excision repair cross-complementation group 6-like.	Serine/threonine-protein kinase PLK.	0.845
ENSCVAP00000006523	rad18	ENSCVAP00000006523	ENSCVAP00000000155	Excision repair cross-complementation group 6-like.	RAD18 E3 ubiquitin protein ligase.	0.818
ENSCVAP00000006523	ruvbl1	ENSCVAP00000006523	ENSCVAP00000022564	Excision repair cross-complementation group 6-like.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.815
PLK1	ENSCVAP00000005887	ENSCVAP00000030252	ENSCVAP00000005887	Serine/threonine-protein kinase PLK.	XPGI domain-containing protein.	0.521