STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSBPL8Oxysterol-binding protein; Belongs to the OSBP family. (896 aa)    
Predicted Functional Partners:
ENSCVAP00000001543
Katanin p60 subunit A-like 2.
   
 
 0.647
LOC107104625
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.644
slc6a6
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.641
yeats4
YEATS domain containing 4.
      
 0.546
LOC107092904
SUZ RNA binding domain containing 1.
   
  
 0.544
etv1
Ets variant 1.
   
  
 0.518
gm2a
GM2 ganglioside activator.
      
 0.485
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
      
 0.478
slc22a18
Solute carrier family 22 member 18.
   
  
 0.457
ENSCVAP00000021074
Pleckstrin homology-like domain, family A, member 2.
      
 0.450
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.