STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000006526LHFPL tetraspan subfamily member 5a. (213 aa)    
Predicted Functional Partners:
LOC107085073
Uncharacterized protein.
   
 0.597
ENSCVAP00000029057
Protocadherin-related 15a.
   
 0.597
LOC107093593
Uncharacterized protein.
   
 0.597
LOC107092741
Transmembrane channel-like protein.
   
 
 0.517
tmc3
Transmembrane channel-like protein.
   
 
 0.429
LOC107083736
Transmembrane channel-like protein.
   
 
 0.429
cib3
Calcium and integrin binding family member 3.
   
 
 0.419
LOC107092747
Transmembrane channel-like protein.
     
 0.418
ENSCVAP00000020107
Cadherin-related 23.
   
 0.415
CIB2
Calcium and integrin binding family member 2.
   
 
 0.402
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.