STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000006536MHC_II_beta domain-containing protein. (116 aa)    
Predicted Functional Partners:
LOC107082188
Uncharacterized protein.
     
  0.910
ENSCVAP00000028987
Ig-like domain-containing protein.
     
  0.906
espl1
Extra spindle pole bodies like 1, separase.
   
 
 0.689
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.562
ndc80
NDC80 kinetochore complex component.
   
  
 0.553
nusap1
Nucleolar and spindle associated protein 1.
   
  
 0.541
ttk
Ttk protein kinase.
   
  
 0.538
LOC107104679
Ig-like domain-containing protein.
  
  
  0.515
cep55
Centrosomal protein 55 like.
   
  
 0.514
ENSCVAP00000014619
Uncharacterized protein.
   
  
 0.512
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.