STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107101433SRSF protein kinase 1b. (659 aa)    
Predicted Functional Partners:
LOC107087489
SRSF protein kinase 1a.
  
  
 
0.901
LOC107093669
Serine and arginine rich splicing factor 5b.
    
 0.840
Srsf6
Serine and arginine rich splicing factor 6.
    
 0.840
srsf5
Serine and arginine rich splicing factor 5a.
    
 0.840
LOC107091295
Serine and arginine rich splicing factor 9.
    
 0.810
LOC107089377
Uncharacterized protein.
    
 0.805
LOC107090357
Serine and arginine rich splicing factor 1a.
    
 0.805
srsf2
Serine and arginine rich splicing factor 2a.
    
 0.789
SRSF3
Serine and arginine rich splicing factor 3.
    
 0.745
LOC107101924
RRM domain-containing protein.
    
 0.745
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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