STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107087010Helix-loop-helix protein 2-like. (124 aa)    
Predicted Functional Partners:
gsc
Goosecoid.
    
 0.488
LOC107095642
Transcription factor 12.
    
 0.480
LOC107100736
Uncharacterized protein.
    
 0.480
ENSCVAP00000020672
Uncharacterized protein.
    
 0.480
LOC107098382
Transcription factor 3b.
    
 0.480
ENSCVAP00000027909
Uncharacterized protein.
    
 0.480
LOC107096961
Transcription factor 3a.
    
 0.480
ldb2
LIM domain binding 2a.
    
 0.430
ENSCVAP00000011588
LIM domain binding 2a.
    
 0.430
LOC107090769
LIM-domain binding 1b.
    
 0.430
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.