STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000006669PHD-type domain-containing protein. (680 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 
 0.835
rbbp5
Retinoblastoma binding protein 5.
    
 
 0.827
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.810
setd1a
SET domain containing 1A, histone lysine methyltransferase.
   
 
 0.717
LOC107091290
SET domain containing 1B, histone lysine methyltransferase a.
   
 
 0.717
wdr82
WD repeat domain 82.
   
 
 0.681
LOC107103115
WD_REPEATS_REGION domain-containing protein.
   
 
 0.681
actl6a
Actin-like 6A; Belongs to the actin family.
   
 
 0.619
LOC107093928
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 
 0.580
LOC107103645
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 
 0.580
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.