STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmp28Matrix metallopeptidase 28. (435 aa)    
Predicted Functional Partners:
ENSCVAP00000026548
ADAM metallopeptidase domain 19b.
      
 0.671
KRT222
Keratin 222; Belongs to the intermediate filament family.
      
 0.644
timp4
TIMP metallopeptidase inhibitor 4.
    
 0.563
ENSCVAP00000024289
Endothelin receptor type Ab.
      
 0.512
LOC107086808
Hemopexin; Binds heme and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation.
      
 0.509
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.487
LOC107083192
TIMP metallopeptidase inhibitor 2b.
    
 0.466
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.466
ARMC6
Armadillo repeat containing 6.
      
 0.406
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.