STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
parp16Poly [ADP-ribose] polymerase. (301 aa)    
Predicted Functional Partners:
CASTOR1
Cytosolic arginine sensor for mTORC1 subunit 1.
    
 0.734
rnf13
Ring finger protein 13.
    
 
 0.678
LOC107104544
Ring finger protein 13.
    
 
 0.678
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.604
parp4
Poly [ADP-ribose] polymerase.
      
 0.598
parp2
Poly [ADP-ribose] polymerase.
      
 0.564
PARP11
Poly [ADP-ribose] polymerase.
      
 0.551
wdr24
WD repeat domain 24.
    
 0.518
tmbim6
Testis enhanced gene transcript (BAX inhibitor 1); Belongs to the BI1 family.
      
 0.503
usp14
Ubiquitin carboxyl-terminal hydrolase.
      
 0.499
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.