STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bms1BMS1 ribosome biogenesis factor. (1194 aa)    
Predicted Functional Partners:
utp20
UTP20 small subunit processome component.
   
 
 0.999
tbl3
Transducin (beta)-like 3.
   
 
 0.999
rcl1
RNA terminal phosphate cyclase-like 1.
   
 0.999
utp3
UTP3 small subunit processome component.
   
 
 0.999
Utp18
UTP18 small subunit processome component.
   
 0.999
LOC107086440
PWP2 small subunit processome component.
   
 
 0.999
wdr3
WD repeat domain 3.
   
 
 0.999
ENSCVAP00000012491
Uncharacterized protein.
   
 0.999
utp4
UTP4 small subunit processome component.
   
 0.999
nop56
NOP56 ribonucleoprotein homolog.
   
 
 0.999
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.