STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ahctf1AT hook containing transcription factor 1. (1820 aa)    
Predicted Functional Partners:
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.993
nup133
Nucleoporin 133.
   
 0.991
nup160
Nucleoporin 160.
   
 0.985
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.984
nup37
Nucleoporin 37.
    
 0.984
nup98
Nucleoporin 98.
   
 0.984
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.983
nup43
Nucleoporin 43.
    
 0.983
Seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
   
 0.982
nup155
Nucleoporin 155.
   
 0.981
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.