STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107082597Poly [ADP-ribose] polymerase. (1812 aa)    
Predicted Functional Partners:
ifih1
Interferon induced with helicase C domain 1.
   
 
 0.727
epsti1
Uncharacterized protein.
   
  
 0.661
LOC107082085
RING-type domain-containing protein.
   
 
 0.555
LOC107095150
RING-type domain-containing protein.
   
 
 0.555
ENSCVAP00000007791
RING-type domain-containing protein.
   
 
 0.555
LOC107092437
Si:dkey-3h3.3.
   
 
 0.555
ENSCVAP00000028757
RING-type domain-containing protein.
   
 
 0.555
LOC107095145
Zgc:66440.
   
 
 0.547
LOC107101928
C3H1-type domain-containing protein.
   
 
 0.501
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
   
 
 0.483
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.