STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000006773Uncharacterized protein. (524 aa)    
Predicted Functional Partners:
kptn
Kaptin (actin binding protein).
    
 0.677
SZT2
SZT2 subunit of KICSTOR complex.
    
 0.673
wdr59
WD repeat domain 59.
    
 0.640
wdr24
WD repeat domain 24.
    
 0.639
nprl2
NPR2 like, GATOR1 complex subunit.
    
 0.637
ENSCVAP00000015681
Uncharacterized protein.
   
 0.590
Depdc5
Uncharacterized protein.
   
 0.590
nprl3
NPR3-like, GATOR1 complex subunit.
     
 0.521
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
     
 0.483
atp6v1h
V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
   
  0.471
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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