STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107083213Link domain-containing protein. (274 aa)    
Predicted Functional Partners:
LOC107103885
Vascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family.
    
 0.658
SOX18
SRY-box transcription factor 18.
   
 0.563
chp1
Calcineurin-like EF-hand protein 1.
    
  0.538
ENSCVAP00000000412
Ins145_P3_rec domain-containing protein.
    
 0.522
ENSCVAP00000000414
Uncharacterized protein.
    
 0.522
Itpr3
Ion_trans domain-containing protein.
    
 0.522
ENSCVAP00000020251
Inositol 1,4,5-trisphosphate receptor, type 1a.
    
 0.522
ENSCVAP00000020262
MIR domain-containing protein.
    
 0.522
itpr2
Inositol 1,4,5-trisphosphate receptor, type 2.
    
 0.522
LOC107082357
Inositol 1,4,5-trisphosphate receptor, type 1b.
    
 0.522
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.