STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000006813Uncharacterized protein. (257 aa)    
Predicted Functional Partners:
LOC107099952
Collagen, type XI, alpha 1b.
 
      0.837
LOC107090900
Fibrillar collagen NC1 domain-containing protein.
 
      0.832
col9a1
Collagen, type IX, alpha 1b.
 
 
 
  0.538
LOC107098689
Collagen, type IX, alpha 1a.
 
 
 
  0.479
col10a1
Collagen, type X, alpha 1b.
 
   
  0.474
col9a3
Collagen, type IX, alpha 3.
 
 
    0.472
LOC107096187
Collagen, type X, alpha 1a.
 
      0.449
LOC107102379
Collagen, type I, alpha 1b.
 
 
 
  0.423
Tep1
Uncharacterized protein.
    
 0.409
ENSCVAP00000015184
TROVE domain-containing protein.
    
 0.409
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.