STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107103723Bromodomain containing 2. (823 aa)    
Predicted Functional Partners:
LOC107101420
Uncharacterized protein.
    
 
 0.670
LOC107080657
Ral guanine nucleotide dissociation stimulator-like 2.
      
 0.665
taf7
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 
 0.660
LOC107104347
PHD finger protein 1.
      
 0.641
ENSCVAP00000017169
Pre-B-cell leukemia homeobox 2.
   
  
 0.640
dmap1
DNA methyltransferase 1 associated protein 1.
    
 
 0.595
nsd3
Nuclear receptor binding SET domain protein 3.
   
 
 0.580
jmjd6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
    
 
 0.577
e2f1
E2F transcription factor 1.
    
 
 0.568
taf1
Transcription initiation factor TFIID subunit.
    
 
0.559
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.