STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107084418ADAM metallopeptidase with thrombospondin type 1 motif, 16. (1178 aa)    
Predicted Functional Partners:
dpy19l3
Dpy-19 like C-mannosyltransferase 3.
      
 0.643
tsr1
TSR1 ribosome maturation factor.
   
  
 0.643
dpy19l1
Dpy-19-like 1, like (H. sapiens).
      
 0.643
sall4
Spalt-like transcription factor 4.
   
  
 0.544
gpr84
G protein-coupled receptor 84.
      
 0.505
ush1c
Usher syndrome 1C.
      
 0.505
irx3
Iroquois homeobox 3a.
   
  
 0.494
mpl
MPL proto-oncogene, thrombopoietin receptor.
      
 0.485
LOC107088125
Beta 3-glucosyltransferase b.
    
 0.472
ENSCVAP00000026718
Beta 3-glucosyltransferase a.
    
 0.472
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.