STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cd44Link domain-containing protein. (60 aa)    
Predicted Functional Partners:
col9a1
Collagen, type IX, alpha 1b.
     
  0.900
LOC107096811
Laminin, gamma 3.
     
  0.900
LOC107102512
Uncharacterized protein.
     
  0.900
ENSCVAP00000008679
Uncharacterized protein.
     
  0.900
LOC107097738
Collagen, type I, alpha 1a.
     
  0.900
lamc2
Laminin, gamma 2.
     
  0.900
ENSCVAP00000011842
Uncharacterized protein.
     
  0.900
col1a2
Collagen, type I, alpha 2.
     
  0.900
LOC107094828
Collagen, type II, alpha 1a.
     
  0.900
col4a6
Collagen, type IV, alpha 6.
     
  0.900
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.