STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dpy30Dpy-30 histone methyltransferase complex regulatory subunit. (105 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 0.998
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.998
wdr5
WD repeat domain 5.
   
 0.960
setd1a
SET domain containing 1A, histone lysine methyltransferase.
    
 0.959
LOC107091290
SET domain containing 1B, histone lysine methyltransferase a.
    
 0.959
cxxc1
CXXC finger protein 1b.
    
 0.897
LOC107099357
CXXC finger protein 1a.
    
 0.897
rps27a
Ribosomal protein S27a.
   
   0.889
wdr82
WD repeat domain 82.
   
 0.869
gsc
Goosecoid.
    
   0.865
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.